| date | stage | club1 | club2 | goals | |
| 2006-07-11 | Qualifying_Round_1 | Labinoti_Elbasan(Albania) | Ekranas_Panevezys(Lithuania) | 1 | 0 | - |
| 2006-07-11 | Qualifying_Round_1 | TVMK_Tallinn(Estonia) | FH_Hafnarfjardar(Iceland) | 2 | 3 | - |
| 2006-07-12 | Qualifying_Round_1 | Metalurgs_Liepaja(Latvia) | FK_Aktobe(Kazakhstan) | 1 | 0 | - |
| 2006-07-12 | Qualifying_Round_1 | MyPa-47(Finland) | The_New_Saints(Wales) | 1 | 0 | - |
| 2006-07-12 | Qualifying_Round_1 | Cork_City(Ireland) | Apollon_Lemesos(Cyprus) | 1 | 0 | - |
| 2006-07-11 | Qualifying_Round_1 | Sioni_Bolnisi(Georgia) | FK_Baku(Azerbaijan) | 2 | 0 | - |
| 2006-07-11 | Qualifying_Round_1 | F91_Dudelange(Luxembourg) | Rabotnicki_Skopje(North_Macedonia) | 0 | 1 | - |
| 2006-07-12 | Qualifying_Round_1 | Shakhtior_Saligorsk(Belarus) | Siroki_Brijeg(Bosnia-Herzegovina) | 0 | 1 | - |
| 2006-07-11 | Qualifying_Round_1 | Birkirkara(Malta) | B36_Torshavn(Faroe Islands) | 0 | 3 | - |
| 2006-07-11 | Qualifying_Round_1 | Linfield_Belfast(Northern Ireland) | Nova_Gorica(Slovenia) | 1 | 3 | - |
| 2006-07-11 | Qualifying_Round_1 | Pyunik_Yerevan(Armenia) | Sheriff_Tiraspol(Moldova) | 0 | 0 | - |
| 2006-07-18 | Qualifying_Round_1 | Ekranas_Panevezys(Lithuania) | Labinoti_Elbasan(Albania) | 3 | 0 | - |
| 2006-07-19 | Qualifying_Round_1 | FH_Hafnarfjardar(Iceland) | TVMK_Tallinn(Estonia) | 1 | 1 | - |
| 2006-07-19 | Qualifying_Round_1 | FK_Aktobe(Kazakhstan) | Metalurgs_Liepaja(Latvia) | 1 | 1 | - |
| 2006-07-19 | Qualifying_Round_1 | The_New_Saints(Wales) | MyPa-47(Finland) | 0 | 1 | - |
| 2006-07-19 | Qualifying_Round_1 | Apollon_Lemesos(Cyprus) | Cork_City(Ireland) | 1 | 1 | - |
| 2006-07-18 | Qualifying_Round_1 | FK_Baku(Azerbaijan) | Sioni_Bolnisi(Georgia) | 1 | 0 | - |
| 2006-07-18 | Qualifying_Round_1 | Rabotnicki_Skopje(North_Macedonia) | F91_Dudelange(Luxembourg) | 0 | 0 | - |
| 2006-07-19 | Qualifying_Round_1 | Siroki_Brijeg(Bosnia-Herzegovina) | Shakhtior_Saligorsk(Belarus) | 1 | 0 | - |
| 2006-07-19 | Qualifying_Round_1 | B36_Torshavn(Faroe Islands) | Birkirkara(Malta) | 2 | 2 | - |
| 2006-07-19 | Qualifying_Round_1 | Nova_Gorica(Slovenia) | Linfield_Belfast(Northern Ireland) | 2 | 2 | - |
| 2006-07-18 | Qualifying_Round_1 | Sheriff_Tiraspol(Moldova) | Pyunik_Yerevan(Armenia) | 2 | 0 | - |
| 2006-07-26 | Qualifying_Round_2 | Nova_Gorica(Slovenia) | Steaua_Bucuresti(Romania) | 0 | 2 | - |
| 2006-07-26 | Qualifying_Round_2 | Levski_Sofia(Bulgaria) | Sioni_Bolnisi(Georgia) | 2 | 0 | - |
| 2006-07-26 | Qualifying_Round_2 | FC_Zurich(Switzerland) | FC_Salzburg(Austria) | 2 | 1 | - |
| 2006-07-26 | Qualifying_Round_2 | Djurgardens_IF(Sweden) | MFK_Ruzomberok(Slovakia) | 1 | 0 | - |
| 2006-07-26 | Qualifying_Round_2 | DVSC_Debrecen(Hungary) | Rabotnicki_Skopje(North_Macedonia) | 1 | 1 | - |
| 2006-07-26 | Qualifying_Round_2 | Cork_City(Ireland) | Red_Star_Belgrade(Serbia) | 0 | 1 | - |
| 2006-07-26 | Qualifying_Round_2 | Fenerbahce(Turkey) | B36_Torshavn(Faroe Islands) | 4 | 0 | - |
| 2006-07-26 | Qualifying_Round_2 | Mlada_Boleslav(Czech Republic) | Valerengen_IF(Norway) | 3 | 1 | - |
| 2006-07-26 | Qualifying_Round_2 | Sheriff_Tiraspol(Moldova) | Spartak(Russia) | 1 | 1 | - |
| 2006-07-26 | Qualifying_Round_2 | Metalurgs_Liepaja(Latvia) | Dynamo_Kiev(Ukraine) | 1 | 4 | - |
| 2006-07-26 | Qualifying_Round_2 | FH_Hafnarfjardar(Iceland) | Legia_Warsaw(Poland) | 0 | 1 | - |
| 2006-07-26 | Qualifying_Round_2 | FC_Kobenhavn(Denmark) | MyPa-47(Finland) | 2 | 0 | - |
| 2006-07-25 | Qualifying_Round_2 | Ekranas_Panevezys(Lithuania) | Dynamo_Zagreb(Croatia) | 1 | 4 | - |
| 2006-07-26 | Qualifying_Round_2 | Hearts_FC(Scotland) | Siroki_Brijeg(Bosnia-Herzegovina) | 3 | 0 | - |
| 2006-08-02 | Qualifying_Round_2 | Steaua_Bucuresti(Romania) | Nova_Gorica(Slovenia) | 3 | 0 | - |
| 2006-08-02 | Qualifying_Round_2 | Sioni_Bolnisi(Georgia) | Levski_Sofia(Bulgaria) | 0 | 2 | - |
| 2006-08-02 | Qualifying_Round_2 | FC_Salzburg(Austria) | FC_Zurich(Switzerland) | 2 | 0 | - |
| 2006-08-02 | Qualifying_Round_2 | MFK_Ruzomberok(Slovakia) | Djurgardens_IF(Sweden) | 3 | 1 | - |
| 2006-08-02 | Qualifying_Round_2 | Rabotnicki_Skopje(North_Macedonia) | DVSC_Debrecen(Hungary) | 4 | 1 | - |
| 2006-08-02 | Qualifying_Round_2 | Red_Star_Belgrade(Serbia) | Cork_City(Ireland) | 3 | 0 | - |
| 2006-08-01 | Qualifying_Round_2 | B36_Torshavn(Faroe Islands) | Fenerbahce(Turkey) | 0 | 5 | - |
| 2006-08-02 | Qualifying_Round_2 | Valerengen_IF(Norway) | Mlada_Boleslav(Czech Republic) | 2 | 2 | - |
| 2006-08-02 | Qualifying_Round_2 | Spartak(Russia) | Sheriff_Tiraspol(Moldova) | 0 | 0 | - |
| 2006-08-02 | Qualifying_Round_2 | Dynamo_Kiev(Ukraine) | Metalurgs_Liepaja(Latvia) | 4 | 0 | - |