| date | stage | club1 | club2 | goals | |
| 2000-08-10 | Qualifying_Round | Universitatea_Craiova(Romania) | Pobeda_Prilep(North_Macedonia) | 1 | 1 | - |
| 2000-08-10 | Qualifying_Round | Folgore(San-Marino) | FC_Basel(Switzerland) | 1 | 5 | - |
| 2000-08-10 | Qualifying_Round | Neftchi_Baku(Azerbaijan) | Nova_Gorica(Slovenia) | 1 | 0 | - |
| 2000-08-10 | Qualifying_Round | Rapid_Wien(Austria) | Teuta_Durres(Albania) | 2 | 0 | - |
| 2000-08-10 | Qualifying_Round | Club_Brugge(Belgium) | Flora_Tallinn(Estonia) | 4 | 1 | - |
| 2000-08-10 | Qualifying_Round | IBV_Vestmannaeyjar(Iceland) | Hearts_FC(Scotland) | 0 | 2 | - |
| 2000-08-10 | Qualifying_Round | AB_Kobenhavn(Denmark) | B36_Torshavn(Faroe Islands) | 8 | 0 | - |
| 2000-08-10 | Qualifying_Round | Coleraine(Northern Ireland) | Orgryte_Goteborg(Sweden) | 1 | 2 | - |
| 2000-08-10 | Qualifying_Round | Ararat_Yerevan(Armenia) | 1.FC_Kosice(Slovakia) | 2 | 3 | - |
| 2000-08-10 | Qualifying_Round | Napredak_Krusevac(Serbia) | Tulevik_Viljandi(Estonia) | 5 | 1 | - |
| 2000-08-10 | Qualifying_Round | MTK_Budapest(Hungary) | Jokerit_Helsinki(Finland) | 1 | 0 | - |
| 2000-08-10 | Qualifying_Round | Vorskla_Poltava(Ukraine) | Rabotnicki_Skopje(North_Macedonia) | 2 | 0 | - |
| 2000-08-08 | Qualifying_Round | IA_Akranes(Iceland) | AA_Gent(Belgium) | 0 | 3 | - |
| 2000-08-10 | Qualifying_Round | Bangor_City(Wales) | Halmstads_BK(Sweden) | 0 | 7 | - |
| 2000-08-10 | Qualifying_Round | FK_Ventspils(Latvia) | Vasas_Budapest(Hungary) | 2 | 1 | - |
| 2000-08-10 | Qualifying_Round | Jeunesse_dEsch(Luxembourg) | Celtic(Scotland) | 0 | 4 | - |
| 2000-08-10 | Qualifying_Round | Petra_Drnovice(Czech Republic) | Buducnost_Banovici(Bosnia-Herzegovina) | 3 | 0 | - |
| 2000-08-10 | Qualifying_Round | Tomori_Berat(Albania) | APOEL_Nicosia(Cyprus) | 2 | 3 | - |
| 2000-08-10 | Qualifying_Round | Rapid_Bucuresti(Romania) | Mika_Ashtarak(Armenia) | 3 | 0 | - |
| 2000-08-10 | Qualifying_Round | Georgia_Tbilisi(Georgia) | Beitar_Jerusalem(Israel) | 0 | 3 | - |
| 2000-08-10 | Qualifying_Round | Omonia_Nicosia(Cyprus) | Neftochimik_Burgas(Bulgaria) | 0 | 0 | - |
| 2000-08-10 | Qualifying_Round | Zeljeznicar_Sarajevo(Bosnia-Herzegovina) | Wisla_Krakow(Poland) | 0 | 0 | - |
| 2000-08-10 | Qualifying_Round | Sheriff_Tiraspol(Moldova) | Olimpija_Ljubljana(Slovenia) | 0 | 0 | - |
| 2000-08-08 | Qualifying_Round | Kapaz_Ganja(Azerbaijan) | Antalyaspor_AS(Turkey) | 0 | 2 | - |
| 2000-08-10 | Qualifying_Round | Zalgiris_Vilnius(Lithuania) | Ruch_Chorzow(Poland) | 2 | 1 | - |
| 2000-08-10 | Qualifying_Round | Aberdeen(Scotland) | Bohemian_D(Ireland) | 1 | 2 | - |
| 2000-08-10 | Qualifying_Round | GI_Gotu(Faroe Islands) | IFK_Norrkoping(Sweden) | 0 | 2 | - |
| 2000-08-10 | Qualifying_Round | Metalurgs_Liepaja(Latvia) | SK_Brann_Bergen(Norway) | 1 | 1 | - |
| 2000-08-10 | Qualifying_Round | Slavia_Mozyr(Belarus) | Maccabi_Haifa(Israel) | 1 | 1 | - |
| 2000-08-10 | Qualifying_Round | Slovan_Bratislava(Slovakia) | Lokomotiv_Tbilisi(Georgia) | 2 | 0 | - |
| 2000-08-10 | Qualifying_Round | Sliema_Wanderers(Malta) | Partizan_Belgrade(Serbia) | 2 | 1 | - |
| 2000-08-10 | Qualifying_Round | Constructorul_Chisinau(Moldova) | CSKA_Sofia(Bulgaria) | 2 | 3 | - |
| 2000-08-10 | Qualifying_Round | AIK_Stockholm(Sweden) | FC_Gomel(Belarus) | 1 | 0 | - |
| 2000-08-10 | Qualifying_Round | HJK_Helsinki(Finland) | CS_Grevenmacher(Luxembourg) | 4 | 1 | - |
| 2000-08-10 | Qualifying_Round | Glentoran(Northern Ireland) | Lillestrom_SK(Norway) | 0 | 3 | - |
| 2000-08-10 | Qualifying_Round | Ekranas_Panevezys(Lithuania) | Lierse_SK(Belgium) | 0 | 3 | - |
| 2000-08-10 | Qualifying_Round | Boavista(Portugal) | Barry_Town(Wales) | 2 | 0 | - |
| 2000-08-10 | Qualifying_Round | Constelacio_Sportiva(Andorra) | Rayo_Vallecano(Spain) | 0 | 10 | - |
| 2000-08-10 | Qualifying_Round | Lausanne_Sports(Switzerland) | Cork_City(Ireland) | 1 | 0 | - |
| 2000-08-10 | Qualifying_Round | NK_Rijeka(Croatia) | Valletta_FC(Malta) | 3 | 2 | - |
| 2000-08-10 | Qualifying_Round | Amica_Wronki(Poland) | FC_Vaduz(Liechtenstein) | 3 | 0 | - |
| 2000-08-24 | Qualifying_Round | Pobeda_Prilep(North_Macedonia) | Universitatea_Craiova(Romania) | 1 | 0 | - |
| 2000-08-24 | Qualifying_Round | FC_Basel(Switzerland) | Folgore(San-Marino) | 7 | 0 | - |
| 2000-08-24 | Qualifying_Round | Nova_Gorica(Slovenia) | Neftchi_Baku(Azerbaijan) | 3 | 1 | - |
| 2000-08-24 | Qualifying_Round | Teuta_Durres(Albania) | Rapid_Wien(Austria) | 0 | 4 | - |
| 2000-08-23 | Qualifying_Round | Flora_Tallinn(Estonia) | Club_Brugge(Belgium) | 0 | 2 | - |
| 2000-08-24 | Qualifying_Round | Hearts_FC(Scotland) | IBV_Vestmannaeyjar(Iceland) | 3 | 0 | - |
| 2000-08-24 | Qualifying_Round | B36_Torshavn(Faroe Islands) | AB_Kobenhavn(Denmark) | 0 | 1 | - |
| 2000-08-24 | Qualifying_Round | Orgryte_Goteborg(Sweden) | Coleraine(Northern Ireland) | 1 | 0 | - |
| 2000-08-24 | Qualifying_Round | 1.FC_Kosice(Slovakia) | Ararat_Yerevan(Armenia) | 1 | 1 | - |
| 2000-08-24 | Qualifying_Round | Tulevik_Viljandi(Estonia) | Napredak_Krusevac(Serbia) | 1 | 1 | - |
| 2000-08-24 | Qualifying_Round | Jokerit_Helsinki(Finland) | MTK_Budapest(Hungary) | 2 | 4 | - |
| 2000-08-24 | Qualifying_Round | Rabotnicki_Skopje(North_Macedonia) | Vorskla_Poltava(Ukraine) | 0 | 2 | - |
| 2000-08-24 | Qualifying_Round | AA_Gent(Belgium) | IA_Akranes(Iceland) | 3 | 2 | - |
| 2000-08-24 | Qualifying_Round | Halmstads_BK(Sweden) | Bangor_City(Wales) | 4 | 0 | - |
| 2000-08-24 | Qualifying_Round | Vasas_Budapest(Hungary) | FK_Ventspils(Latvia) | 3 | 1 | extra_time |
| 2000-08-24 | Qualifying_Round | Celtic(Scotland) | Jeunesse_dEsch(Luxembourg) | 7 | 0 | - |
| 2000-08-24 | Qualifying_Round | Buducnost_Banovici(Bosnia-Herzegovina) | Petra_Drnovice(Czech Republic) | 0 | 1 | - |
| 2000-08-24 | Qualifying_Round | APOEL_Nicosia(Cyprus) | Tomori_Berat(Albania) | 2 | 0 | - |
| 2000-08-24 | Qualifying_Round | Mika_Ashtarak(Armenia) | Rapid_Bucuresti(Romania) | 1 | 0 | - |
| 2000-08-24 | Qualifying_Round | Beitar_Jerusalem(Israel) | Georgia_Tbilisi(Georgia) | 1 | 1 | - |
| 2000-08-24 | Qualifying_Round | Neftochimik_Burgas(Bulgaria) | Omonia_Nicosia(Cyprus) | 2 | 1 | - |
| 2000-08-24 | Qualifying_Round | Wisla_Krakow(Poland) | Zeljeznicar_Sarajevo(Bosnia-Herzegovina) | 3 | 1 | - |
| 2000-08-24 | Qualifying_Round | Olimpija_Ljubljana(Slovenia) | Sheriff_Tiraspol(Moldova) | 3 | 0 | - |
| 2000-08-24 | Qualifying_Round | Antalyaspor_AS(Turkey) | Kapaz_Ganja(Azerbaijan) | 5 | 0 | - |
| 2000-08-24 | Qualifying_Round | Ruch_Chorzow(Poland) | Zalgiris_Vilnius(Lithuania) | 6 | 0 | - |
| 2000-08-24 | Qualifying_Round | Bohemian_D(Ireland) | Aberdeen(Scotland) | 0 | 1 | - |
| 2000-08-24 | Qualifying_Round | IFK_Norrkoping(Sweden) | GI_Gotu(Faroe Islands) | 2 | 1 | - |
| 2000-08-24 | Qualifying_Round | SK_Brann_Bergen(Norway) | Metalurgs_Liepaja(Latvia) | 1 | 0 | - |
| 2000-08-24 | Qualifying_Round | Maccabi_Haifa(Israel) | Slavia_Mozyr(Belarus) | 0 | 0 | - |
| 2000-08-24 | Qualifying_Round | Lokomotiv_Tbilisi(Georgia) | Slovan_Bratislava(Slovakia) | 0 | 2 | - |